Timing belt service through VW will cost you $1,200+. I bought a Gates timing belt kit and a Hepu water pump online and provided it to a trusted Euro independent and the entire job including parts and labour was well under $600 (less than half the VW price).
If they both have full VW log book servicing I'd imagine they're both in good mechanical order, but drive them both and make sure there is no hesitation, rough idle/rough running or 'pinging' during acceleration at low revs, and make sure the engine revs cleanly to redline during acceleration.
Our TDI has been and still is driven pretty abusively (I'm not the one who drives it - it's my sister's car and she has zilch mechanical sympathy) yet at 132,000km it still runs just as well as it did when we picked it up with 7,000km on the clock.
We did have injector issues early on, but they were fixed under warranty. Symptoms are obvious - engine cutting out at idle, poor acceleration, loud pinging and general rough running.
Overall I have to say they seem pretty bulletproof considering what ours is put through and these engines are rated to 300,000km+ in the Caddy vans they're also used in.
Are you going manual or DSG?
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